taxa_ {metagenomeFeatures}R Documentation

MgDb-class Taxa slot helper functions

Description

Helper functions for for MgDb-class taxa slot. taxa_columns - taxa slot column names, taxa_keytypes - taxa slot keytypes (values used with taxa_columns and mgDb_select functions), and taxa_keys - database values for a specific keytype.

Usage

taxa_keys(mgdb, keytype)

## S4 method for signature 'MgDb'
taxa_keys(mgdb, keytype)

taxa_columns(mgdb)

## S4 method for signature 'MgDb'
taxa_columns(mgdb)

taxa_keytypes(mgdb)

## S4 method for signature 'MgDb'
taxa_keytypes(mgdb)

Arguments

mgdb

MgDb-class object.

keytype

character string specifying keys to return

Value

appropriate class object for the slot accessed

Examples

gg85 <- get_gg13.8_85MgDb()
taxa_columns(gg85)
taxa_keytypes(gg85)
taxa_keys(gg85, keytype = "Phylum")
[Package metagenomeFeatures version 2.6.0 Index]