R: MgDb

newMgDb {metagenomeFeatures}

R Documentation

MgDb

Description

MgDb

Usage

newMgDb(db_file, tree, metadata)

Arguments

`db_file`	SQLite filename with database taxonomy and sequence data
`tree`	newick filename with database tree data
`metadata`	list with database metadata

Value

MbDb class object

Examples

metadata_file <- system.file("extdata", 'gg13.8_85_metadata.RData',
    package = "metagenomeFeatures")
load(metadata_file)

gg_db_file <- system.file("extdata", 'gg13.8_85.sqlite',
                          package = "metagenomeFeatures")

gg_tree_file <- system.file("extdata", "gg13.8_85.tre",
                            package = "metagenomeFeatures")

## Creating a new MgDb class object with gg13.8_85 data
newMgDb(db_file = gg_db_file,
        tree = gg_tree_file,
        metadata =  metadata)

[Package metagenomeFeatures version 2.6.0 Index]