seastar2counts {manta} | R Documentation |
This function performs a simple merge between two different SEAStAR tables.
seastar2counts(treat.paths, id.prefix=NA, all=TRUE, uniques=0, ...)
treat.paths |
a named vector of strings of paths to 2 seastar tabular files. |
id.prefix |
prefix to use when naming the rownames of the merged table |
all |
used in the same way as the underlying merge function's all parameter. |
uniques |
determines the replacement value for genes which are unique to the opposite library. |
... |
additional paramters passed on to readSeastar |
a named count matrix or vector
nerge, merge
conditions <- c('ambient','plusFe') ss.names <- caroline::nv(paste('Pgranii-',conditions,'.seastar', sep=''), conditions) ss.paths <- caroline::nv(system.file("extdata",ss.names, package="manta"), conditions) dfm <- seastar2counts(ss.paths)