nr {manta} | R Documentation |
.
nr(obj, meta.lev, pair)
obj |
A manta object. |
meta.lev |
which taxinomic rank to use for subset normalization estimation. |
pair |
A named vector of conditions factors |
table of normalization ratios
manta, meta2manta
manta.path <- system.file("extdata","PapaGO-BLAST.results-diatoms.Rdata", package="manta") load(manta.path) x <- calcNormFactors(x) conditions <- factor(x=1:2, labels=c('ambient','plusFe')); names(conditions) <- c('ref','obs') nr(x, meta.lev='genus_sp', pair=conditions)