generics.immunoclust {immunoClust}R Documentation

Generic function definitions in immunoClust

Description

Collection of generic function definitions used in immunoClust either for an immunoClust or an immunoMeta object.

Usage

nobs(object, ...)

npar(object, ...)

ncls(object, ...)

weights(object, ...)

mu(object, ...)

sigma(object, ...)

label(object, ...)

subset(x, ...)

parameters(object, ...)

transformParams(object, ...)

Arguments

object, x

an object to apply the function.

...

addionional options to be passed tomethods

Value

The appropriate value for the specific cal (see dection Details).

Details

nobs

already generic in stats. Here, returns the number of clustered objects either cell-events or cell-clusters in cell event or meta clustering.

npar

returns the number of parameters used for clustering.

ncls

returns the number of cluster, either cell-event cluster or meta-cluster.

weights

already generic in stats. Here, returns the weights of the mixture models for the cell-event of meta-clustering.

mu

returns the cluster means.

sigma

already generic in stats. Here, returns the co-variance matrices of the clusters.

label

returns the cluster label, i.e. the assignment of the clustered objects to the clusters.

events

returns the number of cell-events for the clusters.

subset

alreay generic in stats. Here, returns an object with mixture model on a subset of parameters.

parameters

already generic in flowCore. Here, lists the parameters used for clustering.

transformParam

return an object with transformed mixture model parameters.

Author(s)

Till Sörensen till-antoni.soerensen@charite.de

See Also

immunoClust, immunoMeta


[Package immunoClust version 1.18.1 Index]