plot.immunoMeta {immunoClust} | R Documentation |
This method generates scatterplot revealing the cluster assignment.
## S3 method for class 'immunoMeta' plot(x, pos=c(), main="", plot.childs=TRUE, plot.unclassified=FALSE, plot.subset=c(), inc.childs=c(), plot.ellipse=TRUE, plot.all=FALSE, ...)
x |
An object of class |
pos |
gives the position in the immunoMeta-hierarchy to plot
( |
main |
additional title which is concatenated with the position and description path of the plotted level. |
plot.subset |
an array of indices for the parameter selection to be plotted. |
plot.unclassified |
if set, the unclassified clusters,i.e clusters not assigned into a sub-level, are plotted rather than the classified clusters. |
plot.childs |
colours the clusters by the sub-level rather than the clusters themselves. By default colours are assigned by sub-level index repeated in red, green,blue,cyan,magenta,yellow,gray,black |
inc.childs |
optionally, to restrict to a particular selection of sub-levels to plot. |
plot.ellipse |
surrounds the cell-cluster center by an ellipse reflecting the meta-cluster deviation |
plot.all |
plots all sub-levels. Usefull for a full annotation documentation with a pdf file. |
... |
Further graphical parameters passed to the generic function
|
Plots the clustering assignment on an appropriated plotting device.
Till Sörensen till-antoni.soerensen@charite.de
data(dat.meta) plot(dat.meta)