plotReadStats {icetea} | R Documentation |
Plot read statistics from the CapSet object
plotReadStats(CSobject, plotType = "dodge", plotValue = "numbers", outFile = NULL) ## S4 method for signature 'CapSet' plotReadStats(CSobject, plotType = "dodge", plotValue = "numbers", outFile = NULL)
CSobject |
The |
plotType |
character. The type of plot to make. Choose from "stack" or "dodge" for either a stacked barchart, or a bar chart with "dodged" positions (analogous to ggplot) |
plotValue |
character. What values to plot. Choose from "numbers" or "proportions". If "proportions" is selected, the proportion of reads w.r.t total demultiplexed reads per sample would be plotted |
outFile |
character. Output file name. (filename extention would be used to determine type). If outfile not specified, the plot would be retured on the screen |
A ggplot object, or a file. Plot showing the number/proportion of reads in each category, per sample
# load a previously saved CapSet object cs <- exampleCSobject() plotReadStats(cs, plotType = "dodge", plotValue = "numbers", outFile = "test_numbers.pdf")