hyp_show {hypeR}R Documentation

Convert hyp object to an interactive datatable

Description

Convert hyp object to an interactive datatable

Usage

hyp_show(hyp_obj, simple = FALSE, stylish = FALSE)

Arguments

hyp_obj

A hyp object

simple

Use true to only include essential dataframe columns

stylish

Use true to add a bootstrap styling theme to datatable

Value

A datatable object

Examples

gsets <- hyperdb_fetch(type="gsets", "KEGG_2019_Human")

signature <- c("IDH3B","DLST","PCK2","CS","PDHB","PCK1","PDHA1","LOC642502",
               "PDHA2","LOC283398","FH","SDHD","OGDH","SDHB","IDH3A","SDHC",
               "IDH2","IDH1","OGDHL","PC","SDHA","SUCLG1","SUCLA2","SUCLG2")

# Perform hyper enrichment
hyp_obj <- hypeR(signature, gsets, bg=2522, fdr_cutoff=0.05)

# Export
hyp_show(hyp_obj)


[Package hypeR version 1.2.0 Index]