msigdb_fetch {hypeR} | R Documentation |
Fetch gsets from msigdb
msigdb_fetch(msigdb_path, symbol = c("C1", "C2.CGP", "C2.CP", "C2.CP.BIOCARTA", "C2.CP.KEGG", "C2.CP.REACTOME", "C3.MIR", "C3.TFT", "C4.CGN", "C4.CM", "C5.BP", "C5.CC", "C5.MF", "C6", "C7", "H"))
msigdb_path |
A list containing the gene set directory and version number of gene sets |
symbol |
A symbol corresponding to a msigdb gene set |
A list of gene sets
msigdb_path <- msigdb_download_all("Homo sapiens") REACTOME <- msigdb_fetch(msigdb_path, "C2.CP.REACTOME")