.dots_plot {hypeR}R Documentation

Plot top enriched genesets

Description

Plot top enriched genesets

Usage

.dots_plot(hyp_df, top = 20, abrv = 50, sizes = TRUE,
  pval_cutoff = 1, fdr_cutoff = 1, val = c("fdr", "pval"),
  title = "")

Arguments

hyp_df

A dataframe from a hyp object

top

Limit number of genesets shown

abrv

Abbreviation length of genesetlabels

sizes

Size dots by geneset sizes

pval_cutoff

Filter results to be less than pval cutoff

fdr_cutoff

Filter results to be less than fdr cutoff

val

Choose significance value e.g. c("fdr", "pval")

title

Plot title

Value

A ggplot object


[Package hypeR version 1.2.0 Index]