.hiearchy_map {hypeR}R Documentation

Plot hiearchy map

Description

Plot hiearchy map

Usage

.hiearchy_map(hyp_df, rgsets_obj, title = "", pval_cutoff = 1,
  fdr_cutoff = 1, val = c("fdr", "pval"), top = NULL)

Arguments

hyp_df

A dataframe from a hyp object

rgsets_obj

A relatonal geneset from a hyp object

title

Plot title

pval_cutoff

Filter results to be less than pval cutoff

fdr_cutoff

Filter results to be less than fdr cutoff

val

Choose significance value displayed when hovering nodes e.g. c("fdr", "pval")

top

Limit number of pathways shown

Value

A visNetwork object


[Package hypeR version 1.2.0 Index]