.ks_enrichment {hypeR}R Documentation

Enrichment test via one-sided Kolmogorov–Smirnov test

Description

Enrichment test via one-sided Kolmogorov–Smirnov test

Usage

.ks_enrichment(signature, gsets, weights = NULL, weights.pwr = 1,
  absolute = FALSE, do.plots = TRUE)

Arguments

signature

A vector of ranked symbols

gsets

A list of genesets

weights

Weights for weighted score (Subramanian et al.)

weights.pwr

Exponent for weights (Subramanian et al.)

absolute

Takes max-min score rather than the max deviation from null

do.plot

Use true to generate plot

Value

A list of data and plots


[Package hypeR version 1.2.0 Index]