FDRsupp-class {gQTLstats}R Documentation

Class "FDRsupp"

Description

Support for FDR computations with ciseStore instances

Objects from the Class

Objects can be created by calls of the form new("FDRsupp", ...).

Slots

tab:

Object of class "data.frame" a table with association scores and plug-in FDR estimates evaluated on selected score values

FDRfunc:

Object of class "function" a function of one argument with input association score and output the corresponding FDR estimate

FDRmodel:

Object of class "gam" that was fit to elements of tab

filterUsed:

Object of class "function" a copy of the function used for filtering the store to create the FDRfunc element.

sessinfo:

sessionInfo() value at time of construction

theCall:

instance of class "call" showing call leading to construction

Methods

getFDRfunc

signature(x = "FDRsupp"): extract the FDR approximating function, a function of one (vector) argument assumed to represent association scores, evaluating to the plug-in FDR estimates corresponding to these scores

getTab

signature(x = "FDRsupp"): extract the table of association scores and empirical FDR estimates

Note

Typically the FDRfunc function is constructed using a smooth model relating the estimated FDR to association scores.

Examples

showClass("FDRsupp")

[Package gQTLstats version 1.18.0 Index]