defLeafCells {flowSpy} | R Documentation |
definition of root cells
defLeafCells(object, leaf.cells = NULL, pseudotime.cutoff = 0, verbose = FALSE)
object |
an FSPY object |
leaf.cells |
character or numeric. Cell name of the root cells or cluster.id of root.cells |
pseudotime.cutoff |
numeric. Cutoff of pseudotime. Cells with pseudotime over pseudotime.cutoff will be set to be leaf cells |
verbose |
logical. Whether to print calculation progress. |
An FSPY object
if (FALSE) { # Define leaf cells by cluster fspy <- defLeafCells(fspy, leaf.cells = 1, verbose = TRUE) fspy <- defLeafCells(fspy, leaf.cells = c(1,3), verbose = TRUE) # Define root cells by cell names cells <- test.meta.data$cell[which(test.meta.data$stage == "D10")] cells <- as.character(cells) fspy <- defLeafCells(fspy, leaf.cells = cells, verbose = TRUE) }