correctBatchFSPY {flowSpy} | R Documentation |
Remove batch effect in FSPY object
correctBatchFSPY( object, batch = NULL, par.prior = TRUE, mean.only = TRUE, verbose = FALSE, ... )
object |
An FSPY object |
batch |
vector. Batch covariate (only one batch allowed) |
par.prior |
logical. TRUE indicates parametric adjustments will be used, FALSE indicates non-parametric adjustments will be used. |
mean.only |
logical. FALSE If TRUE ComBat only corrects the mean of the batch effect (no scale adjustment) |
verbose |
logical. Whether to show log information |
... |
Parameters passing to |
An FSPY object after removing batch effect
An FSPY object with corrected batch effects
if (FALSE) { plot.meta <- fetchPlotMeta(fspy) batch <- as.numeric(plot.meta$stage) fspy <- correctBatchFSPY(object, batch = batch) }