runUMAP {flowSpy}R Documentation

Calculating UMAP

Description

Calculate Uniform Manifold Approximation and Projection in FSPY

Usage

runUMAP(
  object,
  umap.config = umap.defaults,
  n_neighbors = 30,
  dims = 2,
  verbose = FALSE,
  ...
)

Arguments

object

an FSPY object

umap.config

object of class umap.config. See umap.

n_neighbors

numeric. Number of neighbors

dims

numeric. Dim of umap, you can also change it in umap.config.

verbose

logical. Whether to print calculation progress.

...

Options to pass on to the umap function

Value

An FSPY object

See Also

umap

Examples


if (FALSE) {

fspy <- runUMAP(fspy, verbose = TRUE)
fspy <- runUMAP(fspy, n_neighbors = 20, verbose = TRUE)

}



[Package flowSpy version 1.0.4 Index]