getRandomBSJunctions {circRNAprofiler}R Documentation

Retrieve random back-spliced junctions

Description

The function getRandomBSJunctions() retrieves random back-spliced junctions from the user genome annotation.

Usage

getRandomBSJunctions(gtf, n = 100, f = 10)

Arguments

gtf

A dataframe containing genome annotation information This can be generated with formatGTF.

n

Integer specifying the number of randomly selected transcripts from which random back-spliced junctions are extrated. Default value = 100.

f

An integer specifying the fraction of single exon circRNAs that have to be present in the output data frame. Default value is 10.

Value

A data frame.

Examples

# Load short version of the gencode v19 annotation file
data("gtf")

# Get 10 random back-spliced junctions
randomBSJunctions <- getRandomBSJunctions(gtf, n = 10, f = 10)


[Package circRNAprofiler version 1.0.0 Index]