plotGridSearchPerplexitycelda_CG {celda} | R Documentation |
This function plots perplexity as a function of the cell/gene (K/L) clusters as generated by celdaGridSearch().
plotGridSearchPerplexitycelda_CG(celdaList, sep)
celdaList |
Object of class 'celdaList'. |
sep |
Numeric. Breaks in the x axis of the resulting plot. |
A ggplot plot object showing perplexity as a function of clustering parameters.
data(celdaCGSim, celdaCGGridSearchRes) celdaCGGridSearchRes <- resamplePerplexity( celdaCGSim$counts, celdaCGGridSearchRes ) plotGridSearchPerplexity(celdaCGGridSearchRes)