simulateCells {celda}R Documentation

Simulate count data from the celda generative models.

Description

This function generates a list containing a simulated counts matrix, as well as various parameters used in the simulation which can be useful for running celda. The user must provide the desired model (one of celda_C, celda_G, celda_CG) as well as any desired tuning parameters for those model's simulation functions as detailed below.

Usage

simulateCells(model, ...)

Arguments

model

Character. Options available in 'celda::availableModels'.

...

Additional parameters.

Value

List. Contains the simulated counts matrix, derived cell cluster assignments, the provided parameters, and estimated Dirichlet distribution parameters for the model.

Examples

data(celdaCGSim)
dim(celdaCGSim$counts)

[Package celda version 1.2.4 Index]