celdaHeatmap {celda}R Documentation

Plot celda Heatmap

Description

Render a stylable heatmap of count data based on celda clustering results.

Usage

celdaHeatmap(counts, celdaMod, featureIx, ...)

Arguments

counts

Integer matrix. Rows represent features and columns represent cells. This matrix should be the same as the one used to generate 'celdaMod'.

celdaMod

A celdaModel object of class "celda_C", "celda_G", or "celda_CG".

featureIx

Integer vector. Select features for display in heatmap. If NULL, no subsetting will be performed. Default NULL.

...

Additional parameters.

Value

list A list containing dendrogram information and the heatmap grob

Examples

data(celdaCGSim, celdaCGMod)
celdaHeatmap(celdaCGSim$counts, celdaCGMod)

[Package celda version 1.2.4 Index]