violinPlot {celda}R Documentation

Feature Expression Violin Plot

Description

Outputs a violin plot for feature expression data.

Usage

violinPlot(counts, celdaMod, features, plotDots = FALSE)

Arguments

counts

Integer matrix. Rows represent features and columns represent cells.

celdaMod

Celda object of class "celda_G" or "celda_CG".

features

Character vector. Uses these genes for plotting.

plotDots

TRUE or FALSE. If TRUE, the expression of features will be plotted as points in addition to the violin curve.

Value

Violin plot for each feature, grouped by celda cluster

Examples

data(celdaCGSim, celdaCGMod)
violinPlot(counts = celdaCGSim$counts,
    celdaMod = celdaCGMod, features = "Gene_1")

[Package celda version 1.2.4 Index]