plotTargetingDrugsVSsimilarPerturbations {cTRAP} | R Documentation |
Plot similar perturbations against predicted targeting drugs
plotTargetingDrugsVSsimilarPerturbations(targetingDrugs, similarPerturbations, column, labelBy = "pert_iname", quantileThreshold = 0.25, showAllScores = FALSE)
targetingDrugs |
|
similarPerturbations |
|
column |
Character: column to plot (must be available in both databases) |
labelBy |
Character: column in |
quantileThreshold |
Numeric: quantile to use for highlight values within [0, 1] |
showAllScores |
Boolean: showl all scores? If |
ggplot2
plot
Other functions related with the ranking of CMap perturbations: [.perturbationChanges
,
as.table.similarPerturbations
,
dim.perturbationChanges
,
dimnames.perturbationChanges
,
filterCMapMetadata
,
getCMapConditions
,
getCMapPerturbationTypes
,
loadCMapData
,
loadCMapZscores
, parseCMapID
,
plot.perturbationChanges
,
plot.referenceComparison
,
prepareCMapPerturbations
,
print.similarPerturbations
,
rankSimilarPerturbations
Other functions related with the prediction of targeting drugs: loadExpressionDrugSensitivityAssociation
,
plot.referenceComparison
,
predictTargetingDrugs