filterCMapMetadata {cTRAP}R Documentation

Filter CMap metadata

Description

Filter CMap metadata

Usage

filterCMapMetadata(metadata, cellLine = NULL, timepoint = NULL,
  dosage = NULL, perturbationType = NULL)

Arguments

metadata

Data frame (CMap metadata) or character (respective filepath)

cellLine

Character: cell line (if NULL, all values are loaded)

timepoint

Character: timepoint (if NULL, all values are loaded)

dosage

Character: dosage (if NULL, all values are loaded)

perturbationType

Character: type of perturbation (if NULL, all perturbation types are loaded)

Value

Filtered CMap metadata

See Also

Other functions related with the ranking of CMap perturbations: [.perturbationChanges, as.table.similarPerturbations, dim.perturbationChanges, dimnames.perturbationChanges, getCMapConditions, getCMapPerturbationTypes, loadCMapData, loadCMapZscores, parseCMapID, plot.perturbationChanges, plot.referenceComparison, plotTargetingDrugsVSsimilarPerturbations, prepareCMapPerturbations, print.similarPerturbations, rankSimilarPerturbations

Examples

## Not run: 
cmapMetadata <- loadCMapData("cmapMetadata.txt", "metadata")

## End(Not run)
filterCMapMetadata(cmapMetadata, cellLine="HEPG2", timepoint="2 h",
                   dosage="25 ng/mL")

[Package cTRAP version 1.4.0 Index]