correlateAgainstReference {cTRAP}R Documentation

Correlate against data columns

Description

Correlate against data columns

Usage

correlateAgainstReference(diffExprGenes, reference, method,
  pAdjust = "BH")

Arguments

diffExprGenes

Numeric: named vector of differentially expressed genes whose names are gene identifiers and respective values are a statistic that represents significance and magnitude of differentially expressed genes (e.g. t-statistics)

method

Character: comparison method (spearman, pearson or gsea; multiple methods may be selected at once)

pAdjust

Character: method to use for p-value adjustment

Value

Data frame with correlation results per data column


[Package cTRAP version 1.4.0 Index]