loadCTRPgeneExpression {cTRAP} | R Documentation |
If given paths direct to non-existing files, those files will be downloaded
loadCTRPgeneExpression(geneExpressionFile = "CTRP 2.1/geneExpr.txt", geneInfoFile = "CTRP 2.1/geneInfo.txt", cellLineInfoFile = "CTRP 2.1/cellLineInfo.txt") loadCTRPdrugSensitivity(drugSensitivityFile = "CTRP 2.1/drugSensitivity.txt", experimentFile = "CTRP 2.1/experimentInfo.txt", compoundFile = "CTRP 2.1/compoundInfo.txt") loadCTRPcompoundInfo(compoundFile = "CTRP 2.1/compoundInfo.txt") loadNCI60geneExpression(file = "NCI60/geneExpr.xls", cellLineInfoFile = "cellLineInfo.xls") loadGDSC7file(file, filename, type, ...) loadGDSC7cellLineInfo(file = "GDSC_7/cellLineInfo.xlsx") loadGDSC7compoundInfo(file = "GDSC_7/compoundInfo.xlsx") loadGDSC7geneExpression(file = "GDSC_7/geneExpr.txt") loadGDSC7drugSensitivity(file = "GDSC_7/drugs.xlsx")
geneExpressionFile |
Character: path to file with gene expression |
geneInfoFile |
Character: path to file with gene information |
cellLineInfoFile |
Character: path to file with cell line information |
drugSensitivityFile |
Character: path to file with drug sensitivity |
experimentFile |
Character: path to file with experiment information |
compoundFile |
Character: path to file with compound information |
file |
Character: file path |
Data frame