prepareExpressionDrugSensitivityAssociation {cTRAP}R Documentation

Prepare gene expression and drug sensitivity correlation matrix

Description

Prepare gene expression and drug sensitivity correlation matrix

Usage

prepareExpressionDrugSensitivityAssociation(dataset = c("GDSC 7",
  "CTRP 2.1", "NCI60"), method = "spearman")

Arguments

dataset

Character: dataset to use (CTRP, GDSC or NCI60)

method

Character: correlation method to use between gene expression and drug sensitivity

Details

If path direct to non-existing files, respective data will be downloaded.

Value

Correlation matrix between gene expression and drug sensitivity


[Package cTRAP version 1.4.0 Index]