getCMapConditions {cTRAP} | R Documentation |
Downloads metadata if not available
getCMapConditions(metadata, cellLine = NULL, timepoint = NULL, dosage = NULL, perturbationType = NULL, control = FALSE)
metadata |
Data frame (CMap metadata) or character (respective filepath) |
cellLine |
Character: cell line (if |
timepoint |
Character: timepoint (if |
dosage |
Character: dosage (if |
perturbationType |
Character: type of perturbation (if |
control |
Boolean: show controls for perturbation types? |
List of conditions in CMap datasets
Other functions related with the ranking of CMap perturbations: [.perturbationChanges
,
as.table.similarPerturbations
,
dim.perturbationChanges
,
dimnames.perturbationChanges
,
filterCMapMetadata
,
getCMapPerturbationTypes
,
loadCMapData
,
loadCMapZscores
, parseCMapID
,
plot.perturbationChanges
,
plot.referenceComparison
,
plotTargetingDrugsVSsimilarPerturbations
,
prepareCMapPerturbations
,
print.similarPerturbations
,
rankSimilarPerturbations
## Not run: cmapMetadata <- loadCMapData("cmapMetadata.txt", "metadata") ## End(Not run) getCMapConditions(cmapMetadata)