plotTargetingDrugsVSsimilarPerturbations {cTRAP}R Documentation

Plot similar perturbations against predicted targeting drugs

Description

Plot similar perturbations against predicted targeting drugs

Usage

plotTargetingDrugsVSsimilarPerturbations(targetingDrugs,
  similarPerturbations, column, labelBy = "pert_iname",
  quantileThreshold = 0.25, showAllScores = FALSE)

Arguments

targetingDrugs

targetingDrugs object

similarPerturbations

similarPerturbations object

column

Character: column to plot (must be available in both databases)

labelBy

Character: column in similarPerturbations, its metadata or compound information to be used for labelling

quantileThreshold

Numeric: quantile to use for highlight values within [0, 1]

showAllScores

Boolean: showl all scores? If FALSE, only the best score per compound will be plotted

Value

ggplot2 plot

See Also

Other functions related with the ranking of CMap perturbations: [.perturbationChanges, as.table.similarPerturbations, dim.perturbationChanges, dimnames.perturbationChanges, filterCMapMetadata, getCMapConditions, getCMapPerturbationTypes, loadCMapData, loadCMapZscores, parseCMapID, plot.perturbationChanges, plot.referenceComparison, prepareCMapPerturbations, print.similarPerturbations, rankSimilarPerturbations

Other functions related with the prediction of targeting drugs: loadExpressionDrugSensitivityAssociation, plot.referenceComparison, predictTargetingDrugs


[Package cTRAP version 1.4.0 Index]