synchronizeReadDir {breakpointR} | R Documentation |
This function aims to synchronize strand directionality of reads that fall into WW and CC regions.
synchronizeReadDir(files2sync, collapseWidth = 5e+06)
files2sync |
A list of files that contains |
collapseWidth |
A segment size to be collapsed with neighbouring segments. |
A GRanges-class
object that reads synchronized by directionality.
David Porubsky
## Get some files that you want to load exampleFolder <- system.file("extdata", "example_results", package="breakpointRdata") files2sync <- list.files(exampleFolder, full.names=TRUE)[1] synchronizeReadDir(files2sync=files2sync)