histogram-methods {TransView} | R Documentation |
Retrieves the histogram computed by the parseReads
function
## S4 method for signature 'DensityContainer' histogram(dc)
dc |
An object of class DensityContainer. |
The histogram is computed by taking the running average within a window of window size as specified by the argument hwindow
to the function parseReads()
.
The histogram is only counting local reads within the read density maps and outside of gaps or outside of possible range filters that might be in place.
Returns a numeric vector with the histogram in 1Bp resolution starting from 0.
Julius Muller ju-mu@alumni.ethz.ch