initialize,TargetExperimentList-method {TarSeqQC} | R Documentation |
initialize
creates the TargetExperimentList object containing the
experiment results of several targeted sequencing experiments carried out
using a unique bed file.
## S4 method for signature 'TargetExperimentList' initialize(.Object, TEList, feature = NULL, attribute = "coverage")
.Object |
TargetExperimentList class. |
TEList |
List containing all the TargetExperiment objects corresponding to the experiments that will be compared. |
feature |
Character indicating the name of the feature that will be explored (e.g 'amplicon', 'exon', 'gene'). |
attribute |
Character indicating the name of the attribute that will be explored. Should be 'coverage' or 'medianCounts'. |
TargetExperimentList object.
see full example in TargetExperimentList-class
Gabriela A. Merino gmerino@bdmg.com.ar, Cristobal Fresno cfresno@bdmg.com.ar, Yanina Murua ymurua@leloir.org.ar, Andrea S. Llera allera@leloir.org.ar and Elmer A. Fernandez efernandez@bdmg.com.ar
Other TargetExperimentList: TargetExperimentList-class
,
TargetExperimentList
, object
# Defining the set of TargetExperiment objects data(ampliPanel, package="TarSeqQC") data(ampliPanel2, package="TarSeqQC") ampliList<-list(ampliPanel, ampliPanel2) # Defining feature parameter feature<-"amplicon" # Defining attribute parameter attribute<-"coverage" ##Calling the constructor object<-TargetExperimentList(TEList=ampliList, attribute=attribute, feature=feature)