plotPoolPerformance {TarSeqQC} | R Documentation |
plotPoolPerformance
plots density and/or box-plot of the analyzed
attribute achieved in each PCR pool. These graphics could be displayed
together using the ggplot2 geom_violin method.
plotPoolPerformance(object, dens = FALSE, join = FALSE, log = TRUE, attributeThres = NULL) ## S4 method for signature 'TargetExperimentList' plotPoolPerformance(object, dens = FALSE, join = FALSE, log = TRUE, attributeThres = NULL)
object |
TargetExperimentList class object. |
dens |
Logical indicating if density plot should be included |
join |
Logical indicating if boxplot and density function should be plotted together using the ggplot2 geom_violin method. For it uses, dens should be TRUE. |
log |
Logical indicating if the attribute should be considered in log10 scale. |
attributeThres |
Numeric indicating the attribute interval extreme values. It is not a mandatory parameter but if it is specified,then the plots will be colored according to the interval in which falls the attribute median values. |
ggplot2 graphics.
Gabriela A. Merino gmerino@bdmg.com.ar, Cristobal Fresno cfresno@bdmg.com.ar, Yanina Murua ymurua@leloir.org.ar, Andrea S. Llera allera@leloir.org.ar and Elmer A. Fernandez efernandez@bdmg.com.ar
## Loading the TargetExperimentList object data(TEList, package="TarSeqQC") # Attribute boxplot and density plot exploration g<-plotPoolPerformance(TEList,log=FALSE) # x11(type="cairo") if(interactive()){ g }