TarSeqQC-package {TarSeqQC}R Documentation

TarSeqQC: Targeted Sequencing Experiment Quality Control R package

Description

The package models targeted sequencing experiment output using previous packages. This package includes the new following features:

  1. Panel model:

  2. Quality Control of the sequencing run:

  3. Customizable scan bam file parameters.

  4. Customizable pileup build parameters.

  5. Incorporation of fasta sequence.

  6. Fast exploration of read profile for particular features or genomic regions, coloring SNPs occurrences.

Author(s)

Gabriela A. Merino gmerino@bdmg.com.ar, Cristobal Fresno cfresno@bdmg.com.ar, Yanina Murua ymurua@leloir.org.ar, Andrea S. Llera allera@leloir.org.ar and Elmer A. Fernandez efernandez@bdmg.com.ar


[Package TarSeqQC version 1.16.0 Index]