as.marginal.probs {TRONCO}R Documentation

as.marginal.probs

Description

Extract the marginal probabilities from a TRONCO model. The return matrix is indexed with rownames which represent genotype keys - these can be resolved with function keysToNames. It is possible to specify a subset of events to build the matrix, a subset of models if multiple reconstruction have been performed. Also, either the observed or fit probabilities can be extracted.

Usage

as.marginal.probs(x, events = as.events(x), models = names(x$model),
  type = "observed")

Arguments

x

A TRONCO model.

events

A subset of events as of as.events(x), all by default.

models

A subset of reconstructed models, all by default.

type

observed.

Value

The marginal probabilities in a TRONCO model.

Examples

data(test_model)
as.marginal.probs(test_model)
as.marginal.probs(test_model, events=as.events(test_model)[5:15,])


[Package TRONCO version 2.18.0 Index]