get_homologs_besthits {STRINGdb} | R Documentation |
Returns the best blast hits x species of the given input identifiers.
## S4 method for signature 'STRINGdb' get_homologs_besthits(string_ids, symbets = FALSE, target_species_id = NULL, bitscore_threshold=NULL)
string_ids |
a vector of STRING identifiers. |
target_species_id |
NCBI taxonomy identifier of the species to query for homologs (the species must be present in the STRING database) |
bitscore_threshold |
threshold on the bitscore of the blast alignment. |
symbets |
specify whether you want only symmetrical best hits |
Data frame containing the best blast hits x species of the given input identifiers.
Andrea Franceschini