get_homologs {STRINGdb}R Documentation

get_homologs

Description

Returns the homologs of the given input identifiers that are present in the given target_species_id.

Usage

## S4 method for signature 'STRINGdb'
get_homologs(string_ids, target_species_id, bitscore_threshold=NULL)

Arguments

string_ids

a vector of STRING identifiers.

target_species_id

NCBI taxonomy identifier of the species to query for homologs (the species must be present in the STRING database)

bitscore_threshold

threshold on the bitscore of the blast alignment.

Value

Data frame containing the homologs of the given input identifiers and that are present in the given target_species_id.

Author(s)

Andrea Franceschini


[Package STRINGdb version 1.26.0 Index]