mergeSEs {SEtools} | R Documentation |
Merges a list of SummarizedExperiment-class
.
mergeSEs(ll, use.assays = NULL, do.scale = TRUE, commonOnly = TRUE, colColumns = NULL, addDatasetPrefix = TRUE, defValues = list())
ll |
A (named) list of
|
use.assays |
Names (or indexes) of the assays to use. By default, all common assays are used. |
do.scale |
A logical vector indicating (globally or for each assay) whether to perform row unit-variance scaling on each dataset before merging (default TRUE). |
commonOnly |
Logical; whether to restrict to rows present in all datasets (default TRUE). |
colColumns |
A character vector specifying 'colData' columns to include (if available in at least one of the datasets). If NULL, everything is kept. |
addDatasetPrefix |
Logical; whether the name of the dataset should be appended to the sample names (default TRUE). |
defValues |
A list specifying the default values for 'colColumns' when these are absent. |
An object of class
SummarizedExperiment-class
data("SE", package="SEtools") mergeSEs( list( se1=SE[,1:10], se2=SE[,11:20] ) )