parserOutputTFSummary {PhenStat} | R Documentation |
Parsers model output summary from TF framework and returns it in readable named vector format
parserOutputTFSummary(linearRegressionOutput)
linearRegressionOutput |
linear regression output that comes from the TF method; mandatory argument |
Returns a named vector with model output summary results
Natalja Kurbatova, Natasha Karp, Jeremy Mason
Karp N, Melvin D, Sanger Mouse Genetics Project, Mott R (2012): Robust and Sensitive Analysis of Mouse Knockout Phenotypes. PLoS ONE 7(12): e52410. doi:10.1371/journal.pone.0052410
West B, Welch K, Galecki A (2007): Linear Mixed Models: A practical guide using statistical software New York: Chapman & Hall/CRC 353 p.
file <- system.file("extdata", "test6_RR.csv", package="PhenStat") test <- PhenStat:::PhenList(dataset=read.csv(file,na.strings = '-'), testGenotype="Oxr1/Oxr1") result <- PhenStat:::testDataset(test, depVariable="Ca", method="TF", dataPointsThreshold=2) linearRegressionOutput <- PhenStat:::analysisResults(result) PhenStat:::parserOutputTFSummary(linearRegressionOutput)