showInteraction {Path2PPI} | R Documentation |
Use showInteraction
to get detailed information about one
interaction of the predicted PPI.
showInteraction(path2ppi, interaction, mode="default", verbose=TRUE)
path2ppi |
An object from the class |
interaction |
Character vector consisting of the identifiers of the two interactors. |
mode |
Character string. Which information of this interaction is requested. "default": only the predicted interaction and some major information are provided. "detailed": all interactions deduced from each reference species with this interaction is provided. "references": each reference interaction of the current interaction with some major information. "references.detailed": each reference interaction of the current interaction with all available information (extracted from the corresponding iRefIndex data set). |
verbose |
Logical. |
Data frame with the requested information defined in mode
.
Oliver Philipp MolBI-software@bioinformatik.uni-frankfurt.de
data(ai) #Load test data set ppi <- Path2PPI("Autophagy induction", "Podospora anserina", "5145") ppi <- addReference(ppi, "Homo sapiens", "9606", human.ai.proteins, human.ai.irefindex, pa2human.ai.homologs) ppi <- addReference(ppi, "Saccharomyces cerevisiae (S288c)", "559292", yeast.ai.proteins, yeast.ai.irefindex, pa2yeast.ai.homologs) ppi <- predictPPI(ppi,h.range=c(1e-60,1e-20)) interaction <- showInteraction(ppi,interaction=c("B2AT71","B2AE79"), mode="detailed") interaction