loglikelihood {PAIRADISE} | R Documentation |
Used internally in PAIRADISE to compute the log-likelihood function
loglikelihood(M, I1, S1, I2, S2, l.iI, l.iS, logit.psi1, logit.psi2, alpha, s1, s2, s, mu, delta)
M |
Number of replicates for the current exon. Positive integer. |
I1 |
Exon inclusion counts for group 1. Positive integers. |
S1 |
Exon skipping counts for group 1. Positive integers. |
I2 |
Exon inclusion counts for group 2. Positive integers. |
S2 |
Exon skipping counts for group 2. Positive integers. |
l.iI |
Effective length of inclusion isoform. Positive integer. |
l.iS |
Effective length of skipping isoform. Positive integer. |
logit.psi1 |
Numeric vector with values of logit psi1. |
logit.psi2 |
Numeric vector with values of logit psi2. |
alpha |
Numeric vector with values of alpha. |
s1 |
Group 1 standard deviation. Positive number. |
s2 |
Group 2 standard deviation. Positive number. |
s |
Overall standard deviation. Positive number. |
mu |
Parameter mu. |
delta |
Parameter delta. |
log likelihood value at input.