compute.oncoscore {OncoScore} | R Documentation |
compute the OncoScore for a list of genes
compute.oncoscore(data, filter.threshold = 0, analysis.mode = "Log2", cutoff.threshold = 21.09, file = NULL, filter.invalid = TRUE)
data |
input data as result of the function perform.query |
filter.threshold |
threshold to filter for a minimum number of citations for the genes |
analysis.mode |
logaritmic scores to be computed, i.e., log10, log2, natural log or log5 |
cutoff.threshold |
threshold to be used to asses the oncogenes |
file |
should I save the results to text files? |
filter.invalid |
auto-remove genes with invalid count |
the computed OncoScores and the clusters for the genes
data(query) compute.oncoscore(query)