sampleExclusionMask {OUTRIDER}R Documentation

Sample exclusion

Description

To exclude a sample from the fit process, one can use this function to mask specific samples. This can be used if replicates are present.

Usage

sampleExclusionMask(ods, aeMatrix = FALSE)

sampleExclusionMask(ods) <- value

Arguments

ods

An OutriderDataSet object

aeMatrix

If TRUE, it returns a 0/1 matrix for the internal autoencoder functions in the form of feature x sample

value

A logical vector of the length of the samples. If TRUE, the corresponding sample will be excluded from the autoencoder fit.

Value

The exclusion vector/matrix.

Examples

ods <- makeExampleOutriderDataSet()
sampleExclusionMask(ods) <- sample(c(FALSE, TRUE), ncol(ods), replace=TRUE)

sampleExclusionMask(ods)


[Package OUTRIDER version 1.4.2 Index]