coverageByTranscriptW {ORFik}R Documentation

Remake of coverageByTranscript

Description

Allows weights, see coverageByTranscript

Usage

coverageByTranscriptW(x, transcripts, ignore.strand = FALSE, weight = 1L)

Arguments

x

reads (GRanges, GAlignment)

transcripts

GRangesList

ignore.strand

a logical (default: FALSE)

weight

a vector (default: 1L), if single number applies for all, else equal size as x

Value

Integer Rle of coverage, 1 per transcript


[Package ORFik version 1.6.9 Index]