parseCigar {ORFik}R Documentation

Shift ribo-seq reads using cigar string

Description

Example if you want to change a read of length 20, by +12. You need to account for gaps etc, this is done using the cigar string of the read.

Usage

parseCigar(cigar, shift, is_plus_strand)

Arguments

cigar

the cigar of the reads

shift

the shift as integer

is_plus_strand

logical

Value

the shifted read


[Package ORFik version 1.6.9 Index]