loadRegions {ORFik} | R Documentation |
By default loads all parts to .GlobalEnv (global environemnt) Useful to not spend time on finding the functions to load regions.
loadRegions( txdb, parts = c("mrna", "leaders", "cds", "trailers"), extension = "", envir = .GlobalEnv )
txdb |
a TxDb file, a path to one of: (.gtf ,.gff, .gff2, .gff2, .db or .sqlite) or an ORFik experiment |
parts |
the transcript parts you want |
extension |
What to add on the name after leader, like: B -> leadersB |
envir |
Which environment to save to, default (.GlobalEnv) |
NULL (regions set by envir assignment)
# Load all mrna regions to Global environment gtf <- system.file("extdata", "annotations.gtf", package = "ORFik") loadRegions(gtf, parts = c("mrna", "leaders", "cds", "trailers"))