QCplots {ORFik}R Documentation

Correlation and coverage plots for ORFikQC

Description

Correlation plots default to mRNA covering reads. Meta plots defaults to leader, cds, trailer.

Usage

QCplots(
  df,
  region = "mrna",
  stats_folder = paste0(dirname(df$filepath[1]), "/QC_STATS/")
)

Arguments

df

an ORFik experiment

region

a character (default: mrna), make raw count matrices of whole mrnas or one of (leaders, cds, trailers)

stats_folder

directory to save

Details

Output will be stored in same folder as the libraries in df.

Value

NULL (objects stored to disc)


[Package ORFik version 1.6.9 Index]