fread.bed {ORFik} | R Documentation |
Wraps around rtracklayer::import.bed and tries to speed up loading with the use of data.table. Supports gzip, gz, bgz and bed formats. Also safer chromosome naming with the argument chrStyle
fread.bed(filePath, chrStyle = NULL)
filePath |
The location of the bed file |
chrStyle |
a GRanges object, or a |
a GRanges
object
Other utils:
bedToGR()
,
convertToOneBasedRanges()
,
fimport()
,
findFa()
,
optimizeReads()
,
readBam()
,
readWig()
# path to example CageSeq data from hg19 heart sample cageData <- system.file("extdata", "cage-seq-heart.bed.bgz", package = "ORFik") fread.bed(cageData)