loadRegions {ORFik}R Documentation

Get all regions of transcripts specified to environment

Description

By default loads all parts to .GlobalEnv (global environemnt) Useful to not spend time on finding the functions to load regions.

Usage

loadRegions(
  txdb,
  parts = c("mrna", "leaders", "cds", "trailers"),
  extension = "",
  envir = .GlobalEnv
)

Arguments

txdb

a TxDb file, a path to one of: (.gtf ,.gff, .gff2, .gff2, .db or .sqlite) or an ORFik experiment

parts

the transcript parts you want

extension

What to add on the name after leader, like: B -> leadersB

envir

Which environment to save to, default (.GlobalEnv)

Value

NULL (regions set by envir assignment)

Examples

# Load all mrna regions to Global environment
gtf <- system.file("extdata", "annotations.gtf", package = "ORFik")
loadRegions(gtf, parts = c("mrna", "leaders", "cds", "trailers"))

[Package ORFik version 1.6.9 Index]