mbqnPlotRI {MBQN} | R Documentation |
Plot rank invariance frequency and feature coverage of detected RI and NRI features
mbqnPlotRI(obj, verbose = FALSE, ...)
obj |
list object of RI frequencies from |
verbose |
logical indicating to run function quietly. |
... |
additional arguments (cex, cex.lab, cex.axis, cex.main) passed to the plot function. |
Graphical output of the NRI/RI identification results from
mbqnGetNRIfeatures()
. For each detected NRI/RI feature, plot the
feature index against the RI frequencies together with the RI frequency
detection threshold and print the sample coverage.
Figure
Ariane Schad
Schad, A. and Kreuz, C., MBQN: R package for mean/median-balanced quantile normalization. In prep. 2019
mbqnGetNRIfeatures()
for detection of NRI/RI features.
## Check data matrix for RI and NRI features x <- mbqnSimuData("omics.dep") RI <- mbqnGetNRIfeatures(x, low_thr = 0.5, verbose = FALSE) mbqnPlotRI(RI)