IncorporateDepmap {MAGeCKFlute} | R Documentation |
Incorporate Depmap screen into analysis
IncorporateDepmap(dd, symbol = "id", cell_lines = NA, lineages = "All", na.rm = FALSE)
dd |
A data frame. |
symbol |
A character, specifying the column name of gene symbols in the data frame. |
cell_lines |
A character vector, specifying the cell lines in Depmap to be considered. |
lineages |
A character vector, specifying the lineages in Depmap to be considered. |
na.rm |
Boolean, indicating whether removing NAs from the results. |
A data frame with Depmap column attached.
Wubing Zhang
dd.rra = ReadRRA(rra.gene_summary) ## Not run: dd.rra = IncorporateDepmap(dd.rra, cell_lines=rownames(depmap_similarity)[1:3]) head(dd.rra) ## End(Not run)