IncorporateDepmap {MAGeCKFlute}R Documentation

Incorporate Depmap screen into analysis

Description

Incorporate Depmap screen into analysis

Usage

IncorporateDepmap(dd, symbol = "id", cell_lines = NA,
  lineages = "All", na.rm = FALSE)

Arguments

dd

A data frame.

symbol

A character, specifying the column name of gene symbols in the data frame.

cell_lines

A character vector, specifying the cell lines in Depmap to be considered.

lineages

A character vector, specifying the lineages in Depmap to be considered.

na.rm

Boolean, indicating whether removing NAs from the results.

Value

A data frame with Depmap column attached.

Author(s)

Wubing Zhang

Examples

dd.rra = ReadRRA(rra.gene_summary)
## Not run: 
  dd.rra = IncorporateDepmap(dd.rra, cell_lines=rownames(depmap_similarity)[1:3])
  head(dd.rra)

## End(Not run)

[Package MAGeCKFlute version 1.6.5 Index]