OmitCommonEssential {MAGeCKFlute}R Documentation

Omit common essential genes based on depmap data

Description

Omit common essential genes based on depmap data

Usage

OmitCommonEssential(dd, symbol = "id", lineages = "All",
  dependency = -0.5)

Arguments

dd

A data frame.

symbol

A character, specifying the column name of gene symbols in the data frame.

lineages

A character vector, specifying the lineages used for common essential gene selection.

dependency

A numeric, specifying the threshold for common essential gene selection.

Value

A data frame.

Author(s)

Wubing Zhang

Examples

dd.rra = ReadRRA(rra.gene_summary)
dim(dd.rra)
## Not run: 
  rra.omit = OmitCommonEssential(dd.rra)
  dim(rra.omit)

## End(Not run)


[Package MAGeCKFlute version 1.6.5 Index]