geno2lfmm {LEA} | R Documentation |
geno
to lfmm
formatA function that converts from the geno
format to the
lfmm
format.
geno2lfmm(input.file, output.file = NULL, force = TRUE)
input.file |
A character string containing a path to the input file,
a genotypic matrix in the |
output.file |
A character string containing a path to the output file,
a genotypic matrix in the |
force |
A boolean option. If FALSE, the input file is converted only if the output file does not exist. If TRUE, convert the file anyway. |
output.file |
A character string containing a path to the output file,
a genotypic matrix in the |
Eric Frichot
lfmm.data
geno
ancestrymap2lfmm
ancestrymap2geno
ped2lfmm
ped2geno
vcf2geno
lfmm2geno
read.geno
write.geno
# Creation of a file called "genotypes.geno" in the working directory # with 400 SNPs for 50 individuals. data("tutorial") write.geno(tutorial.R, "genotypes.geno") # Conversion from the geno format ("genotypes.geno") # to the lfmm format ("genotypes.lfmm"). # By default, the name of the output file is the same name # as the input file with a .lfmm extension. # Create file: "genotypes.lfmm". output = geno2lfmm("genotypes.geno") # Conversion from the geno format ("genotypes.geno") # to the lfmm format with the output file called "plop.lfmm". # Create file: "plop.lfmm". output = geno2lfmm("genotypes.geno", "plop.lfmm") # As force = false and the file "genotypes.lfmm" already exists, # nothing happens. output = geno2lfmm("genotypes.geno", force = FALSE)