mySquareEM {HiLDA}R Documentation

A function for estimating parameters using Squared EM algorithm

Description

A function for estimating parameters using Squared EM algorithm

Usage

mySquareEM(p, y, tol = 1e-04, maxIter = 10000)

Arguments

p

this variable includes the parameters for mutation signatures and membership parameters

y

this variable includes the information on the mutation features, the number of mutation signatures specified and so on

tol

tolerance for the estimation (when the difference of log-likelihoods become below this value, stop the estimation)

maxIter

the maximum number of iteration of estimation

Value

a list


[Package HiLDA version 1.0.0 Index]