hpaDownload {HPAanalyze} | R Documentation |
Download datasets
Description
Download the latest version of HPA datasets and import them in R. It is
recommended to only download the datasets you need, as some of them may be
very big.
Usage
hpaDownload(downloadList = "histology", version = "latest")
Arguments
downloadList |
A vector or string indicate which datasets to download.
Possible value:
-
'Normal tissue'
-
'Pathology'
-
'Subcellular location'
-
'RNA tissue'
-
'RNA cell line'
-
'RNA transcript tissue'
-
'RNA transcript cell line'
-
'all' : download everything
-
'histology' : same as c('Normal tissue', 'Pathology',
'Subcellular location')
-
'rna' : same as c('RNA tissue', 'RNA cell line')
-
'isoform' : same as c('RNA transcript tissue', 'RNA
transcript cell line')
See https://www.proteinatlas.org/about/download for more information.
|
version |
A string indicate which version to be downloaded. Possible
value:
-
'latest' : Download latest version. Require Internet
connection.
-
'example' : Load the example dataset from 'HPA
analyze' ('hpa_histology_data'). Does not contain rna or
isoform data.
-
'v?' with '?' is a integer: Download a specific version of
the dataset. For example: 'v18' download version 18. Currently support
version 17 and above. Require Internet connection.
|
Value
This function will return a list of tibbles corresponding to
requested datasets.
See Also
hpaDownload
hpa_histology_data
Other downloadable datasets functions:
hpaExport()
,
hpaSubset()
Examples
downloadedData <- hpaDownload(downloadList='all', version='example')
summary(downloadedData)
[Package
HPAanalyze version 1.4.3
Index]