xCell_loader {GmicR}R Documentation

Scales and centers data by sample/row in preparation for discretization

Description

Scales and centers data by sample/row in preparation for discretization

Usage

xCell_loader(File = NULL)

Arguments

File

the name of the text file generated by xCell that contains the cell signature scores.

Value

xCell signatures scaled and centered by sample. For GMIC, ImmuneScore, StromaScore, and MicroenvironmentScore are removed.

Examples

file_dir<-system.file("extdata", "IRIS_xCell_sig.txt", 
package = "GmicR", mustWork = TRUE)
Xcell_sig<-xCell_loader(file_dir)

[Package GmicR version 1.0.6 Index]