AA_REDUCED {DECIPHER} | R Documentation |
The AA_REDUCED
list contains reductions of the standard amino acid alphabet (AA_STANDARD
).
AA_REDUCED
Reduced amino alphabets can sometimes improve sensitivity and specificity of finding homologous matches between amino acid sequences. The first twelve AA_REDUCED
alphabets were optimized for finding synteny between genomic sequences. The remaining alphabets are from a review of published amino acid alphabets (Solis, 2015).
Solis, A. (2015). Amino acid alphabet reduction preserves fold information contained in contact interactions in proteins. Proteins: Structure, Function, and Genetics, 83(12), 2198-2216.
str(AA_REDUCED) AA_REDUCED[[1]]