compute.t.tests {DAPAR}R Documentation

xxxxxx

Description

This function is xxxxxx

Usage

compute.t.tests(qData, sTab, contrast = "OnevsOne", type = "Student")

Arguments

qData

A matrix of quantitative data, without any missing values.

sTab

xxxx

contrast

Indicates if the test consists of the comparison of each biological condition versus each of the other ones (contrast=1; for example H0:"C1=C2" vs H1:"C1!=C2", etc.) or each condition versus all others (contrast=2; e.g. H0:"C1=(C2+C3)/2" vs H1:"C1!=(C2+C3)/2", etc. if there are three conditions).

type

xxxxx

Value

A list of two items : logFC and P_Value; both are dataframe. The first one contains the logFC values of all the comparisons (one column for one comparison), the second one contains the pvalue of all the comparisons (one column for one comparison). The names of the columns for those two dataframes are identical and correspond to the description of the comparison.

Author(s)

Florence Combes, Samuel Wieczorek

Examples

utils::data(Exp1_R25_pept, package='DAPARdata')
obj <- Exp1_R25_pept[1:1000]
keepThat <- mvFilterGetIndices(obj, 'wholeMatrix', ncol(obj))
obj <- mvFilterFromIndices(obj, keepThat)
sTab <- Biobase::pData(obj)
qData <- Biobase::exprs(obj)
ttest <- compute.t.tests(qData,sTab ,"OnevsOne")

[Package DAPAR version 1.18.5 Index]