wrapperCalibrationPlot {DAPAR} | R Documentation |
MSnSet
object,
calling the cp4p
package functions.This function is a wrapper to the calibration.plot method of the
cp4p
package for use with MSnSet
objects.
wrapperCalibrationPlot(vPVal, pi0Method = "pounds")
vPVal |
A dataframe that contains quantitative data. |
pi0Method |
A vector of the conditions (one condition per sample). |
A plot
Samuel Wieczorek
utils::data(Exp1_R25_pept, package='DAPARdata') obj <- Exp1_R25_pept[1:1000] keepThat <- mvFilterGetIndices(obj, 'wholeMatrix', ncol(obj)) obj <- mvFilterFromIndices(obj, keepThat) qData <- Biobase::exprs(obj) sTab <- Biobase::pData(obj) limma <- limmaCompleteTest(qData,sTab) wrapperCalibrationPlot(limma$P_Value[,1])