compareNormalizationD_HC {DAPAR} | R Documentation |
highcharter
Plot to compare the quantitative proteomics data before and after
normalization using the library highcharter
compareNormalizationD_HC( qDataBefore, qDataAfter, condsForLegend = NULL, indData2Show = NULL, palette = NULL )
qDataBefore |
A dataframe that contains quantitative data before normalization. |
qDataAfter |
A dataframe that contains quantitative data after normalization. |
condsForLegend |
A vector of the conditions (one condition per sample). |
indData2Show |
A vector of the indices of the columns to show in the plot. The indices are those of indices of the columns int the data.frame qDataBefore. |
palette |
xxx |
A plot
Samuel Wieczorek
utils::data(Exp1_R25_pept, package='DAPARdata') obj <- Exp1_R25_pept[1:1000] qDataBefore <- Biobase::exprs(obj) conds <- Biobase::pData(obj)[,"Condition"] objAfter <- wrapper.normalizeD(obj,"QuantileCentering","within conditions") compareNormalizationD_HC(qDataBefore, Biobase::exprs(objAfter), conds)