plotZRankedDAG {CompGO} | R Documentation |
This function accepts two functional annotation charts as input, performs a comparison on them using compareZscores() and plots a DAG based on the results. The saturation of each node is computed based on the Pvalue, such that the more significant values are darker in colour.
plotZRankedDAG(setA, setB, ont = "BP", n = 100, maxLabel = NULL, fullNames = TRUE, Pvalues = TRUE)
setA |
FunctionalAnnotationChart to compare |
setB |
FunctionalAnnotationChart to compare |
ont |
The gene ontology category for which to calculate enrichment |
n |
The number of top-ranked Pvalues to compare |
maxLabel |
The maximum number of characters in a node's label |
fullNames |
Whether to print the full GO term label or just the GO id |
Pvalues |
Whether to print P-values alongside each label |
## Not run: data(funChart1) data(funChart2) plotZRankedDAG(funChart1, funChart2, n = 50) ## End(Not run)