calcCoGAPSStat {CoGAPS}R Documentation

calculate statistic on sets of measurements (genes) or samples

Description

calculates a statistic to determine if a pattern is enriched in a a particular set of measurements or samples.

Usage

calcCoGAPSStat(object, sets = NULL, whichMatrix = "featureLoadings",
  numPerm = 1000, ...)

## S4 method for signature 'CogapsResult'
calcCoGAPSStat(object, sets = NULL,
  whichMatrix = "featureLoadings", numPerm = 1000, ...)

Arguments

object

an object of type CogapsResult

sets

list of sets of measurements/samples

whichMatrix

either "featureLoadings" or "sampleFactors" indicating which matrix to calculate the statistics for

numPerm

number of permutations to use when calculatin p-value

...

handles old arguments for backwards compatibility

Value

gene set statistics for each column of A


[Package CoGAPS version 3.6.0 Index]