cutAndPlotResultsT1 {CellNOptR} | R Documentation |
This function takes a model and an optimised bitstring, it cuts the model according to the bitstring and plots the results of the simulation along with the experimental data.
cutAndPlotResultsT1(model, bString, simList=NULL, CNOlist, indexList=NULL, plotPDF = FALSE, tag = NULL, tPt=CNOlist@timepoints[2], plotParams = list(maxrow=10))
model |
a model (the full one that was used for optimisation) |
bString |
a bitstring for T1 as output by gaBinaryT1 (i.e. a vector of 1s and 0s) |
simList |
deprecated argument kept for back compatibility. a simlist corresponding to the model, as output by prep4sim |
CNOlist |
a CNOlist, corresponding to the optimisation one |
indexList |
deprecated argument kept for back compatibility. an indexList, produced by indexFinder ran on the model and the CNOlist above |
plotPDF |
TRUE or FALSE; tells whether you want a pdf to be produced or not |
tag |
NULL or string; tells whether you want to prefix filenames with a tag (replaces the default behaviour). |
tPt |
The number of time points in the data. |
plotParams |
a list of option related to the PDF and plotting outputs. (1) maxrow is the maximum number of row used to plot the results. See plotOptimResultsPan for other fields. |
This function returns plotted MSEs and list of filenames generated (if any)
C.Terfve, T. Cokelaer,A. MacNamara
#load data data(CNOlistToy,package="CellNOptR") data(ToyModel,package="CellNOptR") #pre-process model model = preprocessing(CNOlistToy, ToyModel) #optimise ToyT1opt<-gaBinaryT1( CNOlist=CNOlistToy, model=model, maxGens=20, popSize = 10, verbose=FALSE) #plotting cutAndPlotResultsT1( model=model, CNOlist=CNOlistToy, bString=ToyT1opt$bString, plotPDF=FALSE)