plotCounts {CATALYST}R Documentation

Plot cell counts

Description

Barplot of the number of cells measured for each sample.

Usage

plotCounts(x, color_by = "condition", anno = TRUE)

Arguments

x

a SingleCellExperiment.

color_by

character string specifying a colData(x) column to color by.

anno

logical. Whether to annotate cell numbers as text above bars.

Value

a ggplot object.

Author(s)

Helena Lucia Crowell

References

Nowicka M, Krieg C, Weber LM et al. CyTOF workflow: Differential discovery in high-throughput high-dimensional cytometry datasets. F1000Research 2017, 6:748 (doi: 10.12688/f1000research.11622.1)

Examples

data(PBMC_fs, PBMC_panel, PBMC_md)
sce <- prepData(PBMC_fs, PBMC_panel, PBMC_md)
plotCounts(sce)


[Package CATALYST version 1.10.3 Index]