plotClusterExprs {CATALYST} | R Documentation |
Plots smoothed densities of arcsinh-transformed marker intensities by cluster.
plotClusterExprs(x, k = "meta20", features = NULL)
x |
|
k |
character string. Specifies the clustering to use. |
features |
character string specifying which features to include. Defaults to NULL
(= all features). Alternatively, if the |
a ggplot
object.
Helena Lucia Crowell helena.crowell@uzh.ch
Nowicka M, Krieg C, Weber LM et al. CyTOF workflow: Differential discovery in high-throughput high-dimensional cytometry datasets. F1000Research 2017, 6:748 (doi: 10.12688/f1000research.11622.1)
# construct SCE & run clustering data(PBMC_fs, PBMC_panel, PBMC_md) sce <- prepData(PBMC_fs, PBMC_panel, PBMC_md) sce <- cluster(sce) plotClusterExprs(sce)