plotExprs {CATALYST}R Documentation

Plot expressions

Description

Plots the smoothed densities of arcsinh-transformed marker intensities.

Usage

plotExprs(x, color_by = "condition")

Arguments

x

a SingleCellExperiment.

color_by

character string corresponding to a colData(x) column. Specifies the color coding.

Value

a ggplot object.

Author(s)

Helena Lucia Crowell helena.crowell@uzh.ch

References

Nowicka M, Krieg C, Weber LM et al. CyTOF workflow: Differential discovery in high-throughput high-dimensional cytometry datasets. F1000Research 2017, 6:748 (doi: 10.12688/f1000research.11622.1)

Examples

data(PBMC_fs, PBMC_panel, PBMC_md)
sce <- prepData(PBMC_fs, PBMC_panel, PBMC_md)
plotExprs(sce)


[Package CATALYST version 1.10.3 Index]