ASEset-filters {AllelicImbalance}R Documentation

genotype filter methods

Description

useful genotype filters

Usage

hetFilt(x, ...)

## S4 method for signature 'ASEset'
hetFilt(x, source = "genotype", ...)

Arguments

x

ASEset object

...

internal param

source

'genotype' or 'alleleCounts'

Details

hetFilt returns TRUE if the samples is heterozygote, based on stored genotype information present in the phase data.

Author(s)

Jesper R. Gadin, Lasse Folkersen

Examples


#load example data
data(ASEset)
a <- ASEset

genotype(a) <- inferGenotypes(a)
hets <- hetFilt(a) 


[Package AllelicImbalance version 1.24.0 Index]