inferGenotypes {AllelicImbalance} | R Documentation |
inference of genotypes
inferGenotypes(x, strand = "*", return.class = "matrix", return.allele.allowed = "bi", threshold.frequency = 0, threshold.count.sample = 1)
x |
ASEset |
strand |
strand to infer from |
return.class |
'matrix' or 'vector' |
return.allele.allowed |
vector with 'bi' 'tri' or 'quad'. 'uni' Always gets returned |
threshold.frequency |
least fraction to classify (see details) |
threshold.count.sample |
least amount of counts to try to infer allele |
Oftern necessary information to link AI to SNPs outside coding region
Jesper R. Gadin
data(ASEset) g <- inferGenotypes(ASEset)