DetectedAI-summary {AllelicImbalance} | R Documentation |
Summary helper functions for the DetectedAI-class
frequency_vs_threshold_variable_summary(x, ...) ## S4 method for signature 'DetectedAI' frequency_vs_threshold_variable_summary(x, var = "threshold.count.sample", return.class = "matrix", ...) detectedAI_vs_threshold_variable_summary(x, ...) ## S4 method for signature 'DetectedAI' detectedAI_vs_threshold_variable_summary(x, var = "threshold.count.sample") usedSNPs_vs_threshold_variable_summary(x, ...) ## S4 method for signature 'DetectedAI' usedSNPs_vs_threshold_variable_summary(x, var = "threshold.count.sample")
x |
detectedAI object |
... |
pass on variables internally |
var |
string, see details for available options |
return.class |
'matrix' or 'array' |
Summary helper functions. The documentation will be improved before next release.
Jesper R. Gadin, Lasse Folkersen
#some example code here #generate example data(ASEset) a <- ASEset dai <- detectAI(a, threshold.count.sample=1:50, threshold.frequency=seq(0,0.5,by=0.01), threshold.delta.frequency=seq(0,0.5,by=0.01), threshold.pvalue=rev(seq(0.001,0.05, by=0.005)) ) frequency_vs_threshold_variable_summary(dai)