agdex.scatterplot {AGDEX} | R Documentation |
A function to visualize the results of AGDEX analysis for the entire genome or specific gene-sets in a scatterplot.
agdex.scatterplot(agdex.res, gset.id = NULL)
agdex.res |
result of an AGDEX analysis, the returned result of the function agdex. |
gset.id |
a specified gene-set identifier. Default is set to NULL, which produces a visualization result of the entire genome. |
Returns either a scatter plot of pairs of difference in average log-expression values for genome-wide anlysis or a specified gene-set.
Stan Pounds <stanley.pounds@stjude.org; Cuilan Lani Gao <cuilan.gao@stjude.org>
agdex
; get.gset.result.details
data(agdex.res) # see visualization result of the whole genome agdex.scatterplot(agdex.res, gset.id=NULL) # scatterplot for a specified gene-set agdex.scatterplot(agdex.res, gset.id="DNA_CATABOLIC_PROCESS")