aggregateReference | Aggregate reference samples |
BlueprintEncodeData | Obtain human bulk RNA-seq data from Blueprint and ENCODE |
classifySingleR | Classify cells with SingleR |
combineResults | Combine SingleR results |
DatabaseImmuneCellExpressionData | Obtain human bulk RNA-seq data from DICE |
getDeltaFromMedian | Compute the difference from median |
HumanPrimaryCellAtlasData | Obtain the HPCA data |
ImmGenData | Obtain mouse bulk expression data from the Immunologic Genome Project |
matchReferences | Match labels from two references |
MonacoImmuneData | Obtain bulk RNA-seq data of sorted human immune cells |
MouseRNAseqData | Obtain mouse bulk expression data of sorted cell populations (RNA-seq) |
NovershternHematopoieticData | Obtain bulk microarray expression for sorted hematopoietic cells |
plotScoreDistribution | Plot score distributions of labels. |
plotScoreHeatmap | Plot a score heatmap |
pruneScores | Prune out low-quality assignments |
SingleR | Annotate scRNA-seq data |
trainSingleR | Train the SingleR classifier |