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To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("LiebermanAidenHiC2009")
In most cases, you don't need to download the package archive at all.
LiebermanAidenHiC2009
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Selected data from the HiC paper of E. Lieberman-Aiden et al. in Science (2009)
Bioconductor version: Release (3.1)
This package provides data that were presented in the article "Comprehensive mapping of long-range interactions reveals folding principles of the human genome", Science 2009 Oct 9;326(5950):289-93. PMID: 19815776
Author: Wolfgang Huber, Felix Klein
Maintainer: Felix Klein <fklein at embl.de>
Citation (from within R,
enter citation("LiebermanAidenHiC2009")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("LiebermanAidenHiC2009")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("LiebermanAidenHiC2009")
| Exploration of HiC data | ||
| Reference Manual |
Details
| biocViews | ChIPSeqData, ChipOnChipData, DNASeqData, ENCODE, ExperimentData, GEO, Genome, NCI, SequencingData, SmallRNAData, miRNAData |
| Version | 0.6.0 |
| License | LGPL |
| Depends | KernSmooth, IRanges |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | LiebermanAidenHiC2009_0.6.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Package Short Url | http://bioconductor.org/packages/LiebermanAidenHiC2009/ |
| Package Downloads Report | Download Stats |
Documentation »
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