To install this package, start R and enter:

## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("HiCDataHumanIMR90")

In most cases, you don't need to download the package archive at all.

HiCDataHumanIMR90

Human IMR90 Fibroblast HiC data from Dixon et al. 2012

Bioconductor version: Release (3.1)

The HiC data from Human Fibroblast IMR90 cell line (HindIII restriction) was retrieved from the GEO website, accession number GSE35156 (http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE35156). The raw reads were processed as explained in Dixon et al. (Nature 2012).

Author: Nicolas Servant

Maintainer: Nicolas Servant <Nicolas.Servant at curie.fr>

Citation (from within R, enter citation("HiCDataHumanIMR90")):

Installation

To install this package, start R and enter:

## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("HiCDataHumanIMR90")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiCDataHumanIMR90")

PDF	R Script	HiC Data Human Fibroblast Dixon et al. 2012
PDF		Reference Manual

Details

biocViews	ExperimentData, GEO, Genome, Homo_sapiens_Data
Version	0.102.0
License	GPL-3
Depends	R (>= 2.10)
Imports
LinkingTo
Suggests	HiTC
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	HiTC
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	HiCDataHumanIMR90_0.102.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source	(username/password: readonly)
Package Short Url	http://bioconductor.org/packages/HiCDataHumanIMR90/
Package Downloads Report	Download Stats

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