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To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("targetscan.Mm.eg.db")
In most cases, you don't need to download the package archive at all.
targetscan.Mm.eg.db
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TargetScan miRNA target predictions for mouse
Bioconductor version: Release (3.1)
TargetScan miRNA target predictions for mouse assembled using data from the TargetScan website. TargetScan predicts biological targets of miRNAs by searching for the presence of conserved 8mer and 7mer sites that match the seed region of each miRNA. Also identified are sites with mismatches in the seed region that are compensated by conserved 3' pairing. In mammals, predictions are ranked based on the predicted efficacy of targeting as calculated using the context scores of the sites.
Author: Gabor Csardi <Gabor.Csardi at unil.ch>
Maintainer: James F. Reid <james.reid at ifom-ieo-campus.it>
Citation (from within R,
enter citation("targetscan.Mm.eg.db")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("targetscan.Mm.eg.db")
Documentation
| Reference Manual | ||
| Text | LICENSE |
Details
| biocViews | AnnotationData, FunctionalAnnotation |
| Version | 0.6.1 |
| License | file LICENSE |
| Depends | R (>= 2.7.0), methods, AnnotationDbi(>= 1.18.3) |
| Imports | methods, AnnotationDbi |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | MmPalateMiRNA |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | targetscan.Mm.eg.db_0.6.1.tar.gz |
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Package Short Url | http://bioconductor.org/packages/targetscan.Mm.eg.db/ |
| Package Downloads Report | Download Stats |
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