To install this package, start R and enter:

## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("viper")

In most cases, you don't need to download the package archive at all.

viper

 

Virtual Inference of Protein-activity by Enriched Regulon analysis

Bioconductor version: Release (3.1)

Inference of protein activity from gene expression data, including the VIPER and msVIPER algorithms

Author: Mariano J Alvarez <reef103 at gmail.com>

Maintainer: Mariano J Alvarez <reef103 at gmail.com>

Citation (from within R, enter citation("viper")):

Installation

To install this package, start R and enter:

## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("viper")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("viper")

 

PDF R Script Using VIPER
PDF   Reference Manual
Text   NEWS

Details

biocViews FunctionalPrediction, GeneExpression, GeneRegulation, NetworkEnrichment, Software, SystemsBiology
Version 1.4.0
In Bioconductor since BioC 2.14 (R-3.1) (1.5 years)
License GPL (>=2)
Depends R (>= 2.14.0), Biobase, methods
Imports mixtools, stats, parallel, e1071, KernSmooth
LinkingTo
Suggests bcellViper
SystemRequirements
Enhances
URL
Depends On Me
Imports Me diggit, diggitdata
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source viper_1.4.0.tar.gz
Windows Binary viper_1.4.0.zip
Mac OS X 10.6 (Snow Leopard) viper_1.4.0.tgz
Mac OS X 10.9 (Mavericks) viper_1.4.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/viper/tree/release-3.1
Package Short Url http://bioconductor.org/packages/viper/
Package Downloads Report Download Stats

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