To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("spade")
In most cases, you don't need to download the package archive at all.
spade
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SPADE -- An analysis and visualization tool for Flow Cytometry
Bioconductor version: Release (3.1)
SPADE, or Spanning tree Progression of Density normalized Events, is an analysis and visualization tool for high dimensional flow cytometry data that organizes cells into hierarchies of related phenotypes.
Author: M. Linderman, P. Qiu, E. Simonds, Z. Bjornson
Maintainer: Zach Bjornson <bjornson at stanford.edu>
Citation (from within R,
enter citation("spade")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("spade")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("spade")
| R Script | spade package | |
| Reference Manual | ||
| Text | LICENSE |
Details
| biocViews | Clustering, FlowCytometry, GUI, GraphAndNetwork, Software, Visualization |
| Version | 1.16.0 |
| In Bioconductor since | BioC 2.10 (R-2.15) (3.5 years) |
| License | GPL-2 |
| Depends | R (>= 2.11), igraph, Rclusterpp |
| Imports | Biobase, flowCore |
| LinkingTo | |
| Suggests | flowViz |
| SystemRequirements | |
| Enhances | |
| URL | http://cytospade.org |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | spade_1.16.0.tar.gz |
| Windows Binary | spade_1.16.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | spade_1.16.0.tgz |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/spade/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/spade/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
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Support »
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