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To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("sangerseqR")
In most cases, you don't need to download the package archive at all.
sangerseqR
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Tools for Sanger Sequencing Data in R
Bioconductor version: Release (3.1)
This package contains several tools for analyzing Sanger Sequencing data files in R, including reading .scf and .ab1 files, making basecalls and plotting chromatograms.
Author: Jonathon T. Hill, Bradley Demarest
Maintainer: Jonathon Hill <jhill at genetics.utah.edu>
Citation (from within R,
enter citation("sangerseqR")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("sangerseqR")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sangerseqR")
| R Script | sangerseqR | |
| Reference Manual |
Details
| biocViews | SNP, Sequencing, Software, Visualization |
| Version | 1.4.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (1.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.0.2), Biostrings |
| Imports | methods, shiny |
| LinkingTo | |
| Suggests | BiocStyle, knitr, RUnit, BiocGenerics |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | sangerseqR_1.4.0.tar.gz |
| Windows Binary | sangerseqR_1.4.0.zip |
| Mac OS X 10.6 (Snow Leopard) | sangerseqR_1.4.0.tgz |
| Mac OS X 10.9 (Mavericks) | sangerseqR_1.4.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/sangerseqR/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/sangerseqR/ |
| Package Downloads Report | Download Stats |
Documentation »
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