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To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("pcaGoPromoter")
In most cases, you don't need to download the package archive at all.
pcaGoPromoter
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pcaGoPromoter is used to analyze DNA micro array data
Bioconductor version: Release (3.1)
This package contains functions to ease the analyses of DNA micro arrays. It utilizes principal component analysis as the initial multivariate analysis, followed by functional interpretation of the principal component dimensions with overrepresentation analysis for GO terms and regulatory interpretations using overrepresentation analysis of predicted transcription factor binding sites with the primo algorithm.
Author: Morten Hansen, Jorgen Olsen
Maintainer: Morten Hansen <mhansen at sund.ku.dk>
Citation (from within R,
enter citation("pcaGoPromoter")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("pcaGoPromoter")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pcaGoPromoter")
| R Script | pcaGoPromoter | |
| Reference Manual |
Details
| biocViews | GO, GeneExpression, Microarray, Software, Visualization |
| Version | 1.12.0 |
| In Bioconductor since | BioC 2.10 (R-2.15) (3.5 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.14.0), ellipse |
| Imports | Biobase(>= 2.10.0), AnnotationDbi |
| LinkingTo | |
| Suggests | Rgraphviz, GO.db, hgu133plus2.db, mouse4302.db, rat2302.db, hugene10sttranscriptcluster.db, mogene10sttranscriptcluster.db, Biostrings, pcaGoPromoter.Hs.hg19, pcaGoPromoter.Mm.mm9, pcaGoPromoter.Rn.rn4, serumStimulation, parallel |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | pcaGoPromoter_1.12.0.tar.gz |
| Windows Binary | pcaGoPromoter_1.12.0.zip |
| Mac OS X 10.6 (Snow Leopard) | pcaGoPromoter_1.12.0.tgz |
| Mac OS X 10.9 (Mavericks) | pcaGoPromoter_1.12.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/pcaGoPromoter/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/pcaGoPromoter/ |
| Package Downloads Report | Download Stats |
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