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To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("globaltest")
In most cases, you don't need to download the package archive at all.
globaltest
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Testing groups of covariates/features for association with a response variable, with applications to gene set testing
Bioconductor version: Release (3.1)
The global test tests groups of covariates (or features) for association with a response variable. This package implements the test with diagnostic plots and multiple testing utilities, along with several functions to facilitate the use of this test for gene set testing of GO and KEGG terms.
Author: Jelle Goeman and Jan Oosting, with contributions by Livio Finos and Aldo Solari
Maintainer: Jelle Goeman <j.j.goeman at lumc.nl>
Citation (from within R,
enter citation("globaltest")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("globaltest")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("globaltest")
| R Script | Global Test | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, GO, KEGG, Microarray, OneChannel, Pathways, Software |
| Version | 5.22.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 10.5 years) |
| License | GPL (>= 2) |
| Depends | methods |
| Imports | Biobase, survival, AnnotationDbi, annotate, multtest, graphics |
| LinkingTo | |
| Suggests | vsn, golubEsets, KEGG.db, hu6800.db, Rgraphviz, GO.db, lungExpression, org.Hs.eg.db, annotate, Biobase, survival, GSEABase, penalized, gss, MASS, boot, rpart |
| SystemRequirements | |
| Enhances | |
| URL | http://www.msbi.nl/goeman |
| Depends On Me | GlobalAncova |
| Imports Me | BiSeq, SIM |
| Suggests Me | topGO |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | globaltest_5.22.0.tar.gz |
| Windows Binary | globaltest_5.22.0.zip |
| Mac OS X 10.6 (Snow Leopard) | globaltest_5.22.0.tgz |
| Mac OS X 10.9 (Mavericks) | globaltest_5.22.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/globaltest/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/globaltest/ |
| Package Downloads Report | Download Stats |
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