To install this package, start R and enter:

## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("canceR")

In most cases, you don't need to download the package archive at all.

canceR

 

A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC.

Bioconductor version: Release (3.1)

The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).

Author: Karim Mezhoud. Nuclear Safety Department. Nuclear Science Center of Tunisia.

Maintainer: Karim Mezhoud <kmezhoud at bioinformatics.tn>

Citation (from within R, enter citation("canceR")):

Installation

To install this package, start R and enter:

## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("canceR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("canceR")

 

PDF R Script canceR Vignette
PDF   Reference Manual
Text   NEWS

Details

biocViews GUI, GeneExpression, Software
Version 1.0.0
In Bioconductor since BioC 3.1 (R-3.2) (< 6 months)
License GPL-2
Depends R (>= 3.0.0), tcltk, tcltk2, cgdsr
Imports GSEABase, GSEAlm, tkrplot, geNetClassifier, RUnit, Formula, rpart, Biobase, phenoTest
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source canceR_1.0.0.tar.gz
Windows Binary canceR_1.0.0.zip
Mac OS X 10.6 (Snow Leopard) canceR_1.0.0.tgz
Mac OS X 10.9 (Mavericks) canceR_1.0.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/canceR/tree/release-3.1
Package Short Url http://bioconductor.org/packages/canceR/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center