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To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("affyPara")
In most cases, you don't need to download the package archive at all.
affyPara
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Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays
Bioconductor version: Release (3.1)
The package contains parallelized functions for exploratory oligonucleotide array analysis. The package is designed for large numbers of microarray data.
Author: Markus Schmidberger <schmidb at ibe.med.uni-muenchen.de>, Esmeralda Vicedo <e.vicedo at gmx.net>, Ulrich Mansmann <mansmann at ibe.med.uni-muenchen.de>
Maintainer: Markus Schmidberger <MSchmidberger at freenet.de>
Citation (from within R,
enter citation("affyPara")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("affyPara")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("affyPara")
| R Script | Parallelized affy functions for preprocessing | |
| R Script | Simulation Study for VSN Add-On Normalization and Subsample Size | |
| Reference Manual | ||
| Text | README | |
| Text | NEWS |
Details
| biocViews | Microarray, Preprocessing, Software |
| Version | 1.28.0 |
| In Bioconductor since | BioC 2.2 (R-2.7) (7.5 years) |
| License | GPL-3 |
| Depends | R (>= 2.5.0), methods, affy(>= 1.20.0), snow (>= 0.2-3), vsn(>= 3.6.0), aplpack (>= 1.1.1), affyio |
| Imports | |
| LinkingTo | |
| Suggests | affydata |
| SystemRequirements | |
| Enhances | affy |
| URL | http://www.ibe.med.uni-muenchen.de |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | affyPara_1.28.0.tar.gz |
| Windows Binary | affyPara_1.28.0.zip |
| Mac OS X 10.6 (Snow Leopard) | affyPara_1.28.0.tgz |
| Mac OS X 10.9 (Mavericks) | affyPara_1.28.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/affyPara/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/affyPara/ |
| Package Downloads Report | Download Stats |
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