To install this package, start R and enter:

## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("SeqVarTools")

In most cases, you don't need to download the package archive at all.

SeqVarTools

Tools for variant data

Bioconductor version: Release (3.1)

An interface to the fast-access storage format for VCF data provided in SeqArray, with tools for common operations and analysis.

Author: Stephanie M. Gogarten, Xiuwen Zheng

Maintainer: Stephanie M. Gogarten <sdmorris at u.washington.edu>, Xiuwen Zheng <zhengx at u.washington.edu>

Citation (from within R, enter citation("SeqVarTools")):

To install this package, start R and enter:

## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("SeqVarTools")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SeqVarTools")

PDF	R Script	Introduction to SeqVarTools
PDF		Reference Manual
Text		NEWS

biocViews	GeneticVariability, Genetics, SNP, Sequencing, Software
Version	1.6.0
In Bioconductor since	BioC 2.13 (R-3.0) (2 years)
License	GPL-3
Depends	SeqArray(>= 1.1.1)
Imports	methods, gdsfmt, GenomicRanges, IRanges, S4Vectors, GWASExactHW, VariantAnnotation
LinkingTo
Suggests	BiocGenerics, BiocStyle, RUnit
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	SeqVarTools_1.6.0.tar.gz
Windows Binary	SeqVarTools_1.6.0.zip
Mac OS X 10.6 (Snow Leopard)	SeqVarTools_1.6.0.tgz
Mac OS X 10.9 (Mavericks)	SeqVarTools_1.6.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/SeqVarTools/tree/release-3.1
Package Short Url	http://bioconductor.org/packages/SeqVarTools/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Please read the posting guide. Post questions about Bioconductor to one of the following locations: