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To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("RnaSeqSampleSize")
In most cases, you don't need to download the package archive at all.
RnaSeqSampleSize
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RnaSeqSampleSize
Bioconductor version: Release (3.1)
RnaSeqSampleSize package provides a sample size calculation method based on negative binomial model and the exact test for assessing differential expression analysis of RNA-seq data
Author: Shilin Zhao, Chung-I Li, Yan Guo, Quanhu Sheng, Yu Shyr
Maintainer: Shilin Zhao <zhaoshilin at gmail.com>
Citation (from within R,
enter citation("RnaSeqSampleSize")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("RnaSeqSampleSize")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RnaSeqSampleSize")
| R Script | RnaSeqSampleSize: Sample size estimation by real data | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DifferentialExpression, ExperimentalDesign, GeneExpression, RNASeq, Sequencing, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (< 6 months) |
| License | GPL (>= 2) |
| Depends | R (>= 2.10), RnaSeqSampleSizeData |
| Imports | biomaRt, edgeR, heatmap3, matlab, KEGGREST, Rcpp (>= 0.11.2) |
| LinkingTo | Rcpp |
| Suggests | BiocStyle, knitr |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | RnaSeqSampleSize_1.0.0.tar.gz |
| Windows Binary | RnaSeqSampleSize_1.0.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | RnaSeqSampleSize_1.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | RnaSeqSampleSize_1.0.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/RnaSeqSampleSize/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/RnaSeqSampleSize/ |
| Package Downloads Report | Download Stats |
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